148 research outputs found
Distribution of sedimentary rock types through time in a back-arc basin: A case study from the Jurassic of the Greater Caucasus (Northern Neotethys)
Abstract
The evolution of sedimentary basins can be explored by analyzing the changes in their lithologies and lithofacies (i.e. predominant lithologies). The Greater Caucasus Basin, which was located at the northern margin of the Neotethys Ocean, represents a complete Sinemurian-Tithonian succession. A quantitative analysis of compiled datasets suggests that principal lithologies and lithofacies are represented by siliciclastics, shale and carbonates. The relative abundance of siliciclastics and shale decreased throughout the Jurassic, whereas that of carbonates increased. Evaporites are known from the Upper Jurassic, while volcaniclastics and volcanics, as well as coals, are known only in the Lower to Middle Jurassic. Siliceous rocks are extremely rare. Lithology and lithofacies proportions change accordingly. The Sinemurian-Bathonian sedimentary complex is siliciclastic-and-shale-dominated, whereas the Callovian-Tithonian sedimentary complex is carbonate-dominated. A major change in the character of sedimentation occurred during the Aalenian-Callovian time interval. Regional transgressions and regressions were more important controls of changes in the sedimentary rock proportions than average basin depth. Landward shoreline shifts were especially favorable for carbonate accumulation, whereas siliciclastics and shale were deposited preferentially in regressive settings. An extended area of the marine basin, its lower average depth, and a sharp bathymetric gradient favored a higher diversity of sedimentation. An orogeny at the Triassic-Jurassic transition was responsible for a large proportion of siliciclastics and extensive conglomerate deposition. An arcarc collision in the Middle Jurassic also enhanced the siliciclastic deposition. Both phases of tectonic activity were linked with an increase in volcanics and volcaniclastics. Volcanism itself might have been an important control on sedimentation. A transition to carbonate-dominated sedimentation occurred in the Late Jurassic, reflecting a tectonically calm period
Screened Coulomb interactions in metallic alloys: I. Universal screening in the atomic sphere approximation
We have used the locally self-consistent Green's function (LSGF) method in
supercell calculations to establish the distribution of the net charges
assigned to the atomic spheres of the alloy components in metallic alloys with
different compositions and degrees of order. This allows us to determine the
Madelung potential energy of a random alloy in the single-site mean field
approximation which makes the conventional single-site density-functional-
theory coherent potential approximation (SS-DFT-CPA) method practically
identical to the supercell LSGF method with a single-site local interaction
zone that yields an exact solution of the DFT problem. We demonstrate that the
basic mechanism which governs the charge distribution is the screening of the
net charges of the alloy components that makes the direct Coulomb interactions
short-ranged. In the atomic sphere approximation, this screening appears to be
almost independent of the alloy composition, lattice spacing, and crystal
structure. A formalism which allows a consistent treatment of the screened
Coulomb interactions within the single-site mean-filed approximation is
outlined. We also derive the contribution of the screened Coulomb interactions
to the S2 formalism and the generalized perturbation method.Comment: 28 pages, 8 figure
Screened Coulomb interactions in metallic alloys: II Screening beyond the single-site and atomic sphere approximations
A quantitative description of the configurational part of the total energy of
metallic alloys with substantial atomic size difference cannot be achieved in
the atomic sphere approximation: It needs to be corrected at least for the
multipole moment interactions in the Madelung part of the one-electron
potential and energy. In the case of a random alloy such interactions can be
accounted for only by lifting the atomic sphere and single-site approximations,
in order to include the polarization due to local environment effects.
Nevertheless a simple parameterization of the screened Coulomb interactions for
the ordinary single-site methods, including the generalized perturbation
method, is still possible. We obtained such a parameterization for bulk and
surface NiPt alloys, which allows one to obtain quantitatively accurate
effective interactions in this system.Comment: 24 pages, 2 figure
Local Charge Excesses in Metallic Alloys: a Local Field Coherent Potential Approximation Theory
Electronic structure calculations performed on very large supercells have
shown that the local charge excesses in metallic alloys are related through
simple linear relations to the local electrostatic field resulting from
distribution of charges in the whole crystal.
By including local external fields in the single site Coherent Potential
Approximation theory, we develop a novel theoretical scheme in which the local
charge excesses for random alloys can be obtained as the responses to local
external fields. Our model maintains all the computational advantages of a
single site theory but allows for full charge relaxation at the impurity sites.
Through applications to CuPd and CuZn alloys, we find that, as a general rule,
non linear charge rearrangements occur at the impurity site as a consequence of
the complex phenomena related with the electronic screening of the external
potential. This nothwithstanding, we observe that linear relations hold between
charge excesses and external potentials, in quantitative agreement with the
mentioned supercell calculations, and well beyond the limits of linearity for
any other site property.Comment: 11 pages, 1 table, 7 figure
An intact light harvesting complex I antenna system is required for complete state transitions in Arabidopsis
M.P.J. acknowledges funding fromthe Leverhulme Trust (U.K.) and the Krebs Institute and 69
Project Sunshine at the University of Sheffield. A.V.R. gratefully acknowledges funding 70
fromthe Biotechnology and Biological Sciences Research Council (U.K.), Leverhulme Trust 71
and The Royal Society Wolfson Research Merit Award. C.N.H. and M.P.J. acknowledge 72
research grant BB/M000265/1 from the Biotechnology and Biological Sciences Research 73
Council (UK). C.N.H. was also supported by an Advanced Award 338895 from the 74
European Research Council. This work was also supported as part of the Photosynthetic 75
Antenna Research Center (PARC), an Energy Frontier Research Center funded by the US 76
Department of Energy, Office of Science, and Office of Basic Energy Sciences under Award 77
Number DE-SC0001035. PARC’s role was to provide partial support for C.N.H
Photorespiration: metabolic pathways and their role in stress protection
Photorespiration results from the oxygenase reaction catalysed by ribulose-1,5-bisphosphate carboxylase/
oxygenase. In this reaction glycollate-2-phosphate is produced and subsequently metabolized in the
photorespiratory pathway to form the Calvin cycle intermediate glycerate-3-phosphate. During this metabolic
process, CO2 and NH3 are produced and ATP and reducing equivalents are consumed, thus
making photorespiration a wasteful process. However, precisely because of this ine¤ciency, photorespiration
could serve as an energy sink preventing the overreduction of the photosynthetic electron transport
chain and photoinhibition, especially under stress conditions that lead to reduced rates of photosynthetic
CO2 assimilation. Furthermore, photorespiration provides metabolites for other metabolic processes, e.g.
glycine for the synthesis of glutathione, which is also involved in stress protection. In this review, we
describe the use of photorespiratory mutants to study the control and regulation of photorespiratory pathways.
In addition, we discuss the possible role of photorespiration under stress conditions, such as
drought, high salt concentrations and high light intensities encountered by alpine plants
Different crystal morphologies lead to slightly different conformations of light-harvesting complex II as monitored by variations of the intrinsic fluorescence lifetime
In 2005, it was found that the fluorescence of crystals of the major light-harvesting complex LHCII of green plants is significantly quenched when compared to the fluorescence of isolated LHCII (A. A. Pascal et al., Nature, 2005, 436, 134-137). The Raman spectrum of crystallized LHCII was also found to be different from that of isolated LHCII but very similar to that of aggregated LHCII, which has often been considered a good model system for studying nonphotochemical quenching (NPQ), the major protection mechanism of plants against photodamage in high light. It was proposed that in the crystal LHCII adopts a similar (quenching) conformation as during NPQ and indeed similar changes in the Raman spectrum were observed during NPQ in vivo (A. V. Ruban et al., Nature, 2007, 450, 575-579). We now compared the fluorescence of various types of crystals, differing in morphology and age. Each type gave rise to its own characteristic mono-exponential fluorescence lifetime, which was 5 to 10 times shorter than that of isolated LHCII. This indicates that fluorescence is not quenched by random impurities and packing defects (as proposed recently by T. Barros et al., EMBO Journal, 2009, 28, 298-306), but that LHCII adopts a particular structure in each crystal type, that leads to fluorescence quenching. Most interestingly, the extent of quenching appears to depend on the crystal morphology, indicating that also the crystal structure depends on this crystal morphology but at the moment no data are available to correlate the crystals' structural changes to changes in fluorescence lifetime
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